Journal of Proteomics & Bioinformatics
Open Access

Schiller International University, Heidelberg Campus, Zollhofgarten 1, 69115 Heidelberg, Germany

Publications

• Research   
  GMSECT: Genome-Wide Massive Sequence Exhaustive Comparison Tool for Structural and Copy Number Variations
  Author(s): Abhishek Narain Singh*
  
  GMSECT is a parallel robust ‘Application Interface’ that efficiently handles the large genomic sequences for rapid and efficient processing. It is a ‘message passing interface’ based parallel computing ‘Tool’ that can be operated on a cluster for ‘Massive Sequences Exhaustive Comparison’, to identify matches such as the structural variants. The GMSECT algorithm can be implemented using other parallel application programming interfaces as well such as Posix-threads or can even be implemented in a serial submission fashion. There is complete flexibility to the choice of comparison tool that can be deployed and with the optional parameters as of the choice of comparison tools to suit the speed, sensitivity and specificity of pair wise alignment. The algorithm is simple and robust, and can be applied to compare multiple.. View More»
  DOI: 10.35248/0974-276X.21.14.554

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