Journal of Proteomics & Bioinformatics
Open Access

3^rd International Conference on Proteomics & Bioinformatics

July 15-17, 2013 Courtyard by Marriott Philadelphia Downtown, USA

Scientific Tracks Abstracts

• Protein interactions and the spatial organization of cellular functions

  Gavin Conant

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• Synthetic biology using genomes and proteomes designed de novo

  Michael H. Hecht

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• Single-molecule detection on a protein-array assay platform for an absolute instead of relative quantification of protein-protein interactions

  Jorg D. Hoheisel

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• Proteomic profiling of exosomes released by cancer cells reveals a tissue specific signature

  Suresh Mathivanan

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• Effect of zinc and DHA on the epigenetic regulation of human neuronal cells

  Cenk Suphioglu

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• FMP: A web implementation for robust peptide mass fingerprinting using feature-matching pattern-based support vector machines

  Youyuan Li, Yonghong Wang, Ju Chu, Yingping Zhuang and Siliang Zhang

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• Scale for nature of hydrophobic interactions in proteins

  E Rajasekaran

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• Regularity in the amino acid sequences of proteins

  Chanchal Das Gupta

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• Study of protein interactions by using in-cell NMR spectroscopy

  Alexander Shekhtman

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• Bridging gaps in the chemical interaction matrix via biclustering across activity-modulated feature space

  Gerald Lushington

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• `Is sperm proteomic approach helpful to delineate human infertility?

  Maciej Kurpisz, Karolina Nowicka, Marzena Kamieniczna and Anna Havrylyuk

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• A herbal compound preparation can affect bone metabolism through multiple biological signals

  Ronghua Zhang

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• Crossing over cross-talks: Global signal integration of bacterial two component Systems

  Chandrajit Lahiri

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• Proteomic patterns of colonic mucosal and submucosal tissues delineates Crohn’s colitis and ulcerative colitis

  Amosy E. M\\\'Koma

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• Interaction network of human FOX protein family

  Xu Li

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• Generation of peptides by the model plant Physcomitrella patens

  V. Ivanov, I. Fesenko, R. Ziganshin, A. Skripnikov and V. Govorun

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• Affinity-purification mass spectrometry and bioinformatic analysis for deciphering the protein interactome: Looking for needles in a haystack?

  Manuela Piazzi

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• Application of intensified complementary ions formed in tandem mass spectrometry to identify co-isolated peptides in complex samples

  Frank Kjeldsen

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• A Multiscale view of protein-protein interactions

  Franca Fraternali

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• Comparative proteomics of dehydration-responsive changes in the nucleus reveals genotypespecific adaptation

  Doel Ray, Asis Datta, Subhra Chakraborty and Niranjan Chakraborty

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• Intimacy of integrin β8 with embryo implantation

  Rajesh Kumar Jha, Vijay Kumar, Vineet Kumar Maurya, Chadchan Sangappa, Anubha Joshi and Syed Musthapa Meeran

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• Uncovering the design principles of polyamine regulation in yeast: An integrated modeling and experimental study

  Svetlana Amirova

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• An arrayed human genomic library constructed in the pac shuttle vector pJCPAC-MAM2 for genome-wide association studies and gene therapy

  Jonathon Coren

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• Proteomic and microarray analyses to understand protective role of surfactant protein SP-D in allergy and inflammation

  Uday Kishore

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• Metalloproteomics: Linking metals in cells to the proteins that bind them

  Lydia Finney

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• Non-labeled quantitative proteomic comparison identifies differences in acid resistance between Escherichia coli O157:H7 curli production variants

  Nereus W. Gunther

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• Metabolo-proteomics approach to identify candidate genes for resistance in plants against biotic stress

  Ajjamada C. Kushalappa

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• Intersection of proteomics and bioinformatics in deciphering novel functions of proteins

  Malini Laloraya

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• Protein based diagnostic, prognostic biomarkers for parkinsons disease

  Deepshikha Pande Katare, Saif Ahmad and SK Jain

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• Proteomic analysis of primary cells, mouse organs and whole embryos by 18 O-labeling and mass spectrometric analysis

  Christian Freund, Benno Kuropka, Gesa Albert, Johanna Zierow and Eberhard Krause

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• Affinity proteomic plasma profiles in diseases and ageing

  Jochen M. Schwenk

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• Glycation sites of serum proteins as potential diabetes type 2 biomarkers

  Ralf Hoffmann

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• Identification of nuclear PKR Interactome in acute Leukemia reveals a central Role for PKR in ribosome biogenesis, mRNA processing, gene expression and cell division

  Manuela Piazzi

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• Evolutionary dynamics of human autoimmune disease genes and malfunctioned immunological genes

  Soumita Podder

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• Increased expressivity of mouse protein function representation using the gene ontology

  Harold J Drabkin, David P Hill, Mary E Dolan and Judith A Blake

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• Knowledge discovery from pathology data via machine-learning to enhance laboratory diagnosis and provide an alternative to animal models in fundamental research and toxicology

  Brett A. Lidbury

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• Integrated automated synthetic chromosome assembly and transformation platform for highvalue co-product expression in a fuel ethanol-producing strain to express a low-calorie protein sweetener as a high-value co-product

  Stephen R. Hughes, Hiep Tran, and Tauseef Butt

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• A comprehensive proteomic and epigenomic analysis of FFPE patient melanoma

  Alan Tackett

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• Finding a strict relationship between distribution of residues in a sequence and protein fold

  Alexander Kister

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• Proteins domain classification and prediction from protein secondary structure

  Habes Alkhraisat

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• Comparative phosphoproteomics analysis of synovial fluid proteins in Indian-German osteoarthritis patients

  Sagarika Biswas, Saurabh Sharma, Ashish Sarkar, Narendra Kumar Sharma, S.Ramachandran, Rajesh Malhotra, Karl-Heinz Frosch, Michael Oellerich and Abdul R. Asif

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• A bayesian feature selection approach for biomarker discovery from integrated Omic studies

  Bobbie-Jo Webb-Robertson

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• Molecular modeling of GPCR dimers

  Agnieszka A. Kaczor, Antti Poso, Jana Selent, Ramon Guixà-González, Pau Carrió, Manuela Jörg, Ben Capuano, Manuel Pastor, Stefan Dove

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• Exploring protein biomarkers in saliva using a proteomic approach

  Sompop Bencharit

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• Molecular Glues: Adhesion-mediated control of biomolecular functions

  Kou Okuro

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• Towards molecular medicine approaches in hereditary autoinflammation and the inflammasome

  Sinem Nalbantoglu

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• Integrative bioinformatics for knowledge discovery of PTM networks

  Cathy H. Wu

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• SLiM Pickings: Mining structural and sequence data for the prediction of short linear protein interaction motifs

  Richard J. Edwards

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• Bioinformatics data mining of metagenomes for bioenergy-related enzymes

  Yanbin Yin

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• The genome solver project: Facilitating undergraduate research projects in bioinformatics

  Anne G. Rosenwald, Bradley A. Murray, Theodore Toth, Gaurav S. Arora, Janet Russell and Ramana Madupu

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• Brain-Organ Computer Interface (BOCI)

  Shashi Kanth.K

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