Transcriptomics: Open Access
Open Access
ISSN: 2329-8936
ISSN: 2329-8936
Sai Vishnu Priya1, Sarla N2 and Rajeshwari Ramanan1
Scientific Tracks Abstracts: Transcriptomics
Micronutrients are necessary for both plant and human survival. Rice is the staple food for fifty percent of the worldâ??s population. However, the polished grain, also known as white rice, contains nutritionally insufficient concentrations of iron (Fe) and Zinc (Zn) to meet the daily requirements in diet leading to adverse effect on human health. Identification of candidate genes in major QTLs and their transcriptome analysis will be useful in gene discovery for biofortification. Genomewide maps showed 14 QTLs for iron and zinc concentration in unpolished rice grains of F7 recombinant inbred lines from Madhukar x Swarna. Five candidate genes (OsNAS3, OsNRAMP1, OsHMA, OsAPRT and OsZIP8) which encode for both Fe and Zn and underlie four major QTLs on chromosomes 7 and 12 were used for expression analysis. Three leaf stage (32- days old) green house grown plants showed â?¥2.15 & â?¥1.8 fold expressions of OsNAS3 and OsHMA respectively compared to Madhukar. When 7- days old seedlings were transferred to hoagland solution supplemented with Fe (0.18 mM) and Zn (0.26 mM) and grown for 25- days, all high iron zinc lines (HL) and 75 percent of low iron zinc lines (LL) showed increased expression of OsZIP8 (â?¥2.2 fold) while other genes were down regulated. Omission of Fe and Zn resulted in stunted growth with reduction in chlorophyll, primary root length and number of roots. In omission of Fe and Zn, showed high transcript levels in all HLs and one LL-270(M) with OsNRAMP1, OsHMA compare to sufficient conditions. Sequence analysis of OsHMA in HL and LL showed variations at 32nd and 37th positions where valine is replaced by alanine and arginine with cystein respectively in 75 percent LL.
Sai Vishnu Priya has completed her PhD in 2004 from Sri Venkateswara University and worked as Post-doctoral studies at Directorate of Rice Research, and International Crops Research Institute for Semi-Arid Tropics (ICRISAT), Hyderabad. She is now working as Project Investigator (PI) (DST, WOS A) at Centre for Cellular and Molecular Biology, Hyderabad.